To construct a small animal imaging platform to evaluate intestinal lesions in vivo. Methods A small animal imaging platform was built according to the principle of electronic endoscopic imaging. 6 Balb-c mice were given 3% sodium dextran sulfate or distilled water for free drinking. Physiological status of the mice was monitored and intestinal mucosal injury was observed by endoscope. Results All the mice were underwent endoscopy under anesthesia with an invasive depth of up to 3 cm and no endoscopic-related complications. Endoscopically, the intestinal lesions of mice in dextran sodium sulfate group were gradually aggravated, but that were not changed in control group. Conclusion The endoscopic system can make clear imaging of intestinal mucosa and realize in vivo evaluation and dynamic monitoring of lesions.